26
edits
Changes
→Assignment 1
<h4>INPUT FILE (test-100.fa):</h4>
Edit path calculation (Masek-Paterson): 0.000149
<h4>TEXT OUTPUT (test.maf)</h4>
a score=58
s Chromosome_3565586_3565685_0:0:0_0:0:0_0/1 0 100 + 107 ACCGG-TTGCCCGCTACATGC-TCCAACCATCCGGCGATGGT-TACCTG-CTGCCG-GACTGGTATAGC--GCAGAGCCGCGTCGACACCGCGTATCCGTGCCCCCC
s Chromosome_3568561_3568661_0:0:1_0:0:1_1/1 0 100 + 107 TGGGGATTGCCAG-TCCGTCCGGGGAGGTATTCAG-AAAGGTACACCGGTCTGTTGATATTCATGTAACAGGTATTAATG-ATGAAGAAAG-GAAT--G-GCAAACA
As you can see, the two sequences are now aligned which will show conserved regions of nucleotides between the two.
