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BLAStoise

5 bytes removed, 19:46, 12 February 2017

→‎Assignment 1

<h4>INPUT FILE (test-100.fa):</h4>

>Chromosome_3565586_3565685_0:0:0_0:0:0_0/1 ACCGGTTGCCCGCTACATGCTCCAACCATCCGGCGATGGTTACCTGCTGCCGGACTGGTATAGCGCAGAGCCGCGTCGACACCGCGTATCCGTGCCCCCC >Chromosome_3568561_3568661_0:0:1_0:0:1_1/1 TGGGGATTGCCAGTCCGTCCGGGGAGGTATTCAGAAAGGTACACCGGTCTGTTGATATTCATGTAACAGGTATTAATGATGAAGAAAGGAATGGCAAACA

Edit path calculation (Masek-Paterson): 0.000149

<h4>TEXT OUTPUT (test.maf)</h4>

a score=58

s Chromosome_3565586_3565685_0:0:0_0:0:0_0/1 0 100 + 107 ACCGG-TTGCCCGCTACATGC-TCCAACCATCCGGCGATGGT-TACCTG-CTGCCG-GACTGGTATAGC--GCAGAGCCGCGTCGACACCGCGTATCCGTGCCCCCC

s Chromosome_3568561_3568661_0:0:1_0:0:1_1/1 0 100 + 107 TGGGGATTGCCAG-TCCGTCCGGGGAGGTATTCAG-AAAGGTACACCGGTCTGTTGATATTCATGTAACAGGTATTAATG-ATGAAGAAAG-GAAT--G-GCAAACA

As you can see, the two sequences are now aligned which will show conserved regions of nucleotides between the two.

Jdesmond1

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