Team Darth Vector

From CDOT Wiki
Revision as of 19:54, 16 December 2017 by Agodwin (talk | contribs) (Containers)
Jump to: navigation, search

TEAM, use this for formatting. Wiki Editing Cheat Sheet


Join me, and together we can fork the problem as master and thread

Members


Alistair Godwin

Giorgi Osadze

Leonel Jara


Generic Programming

Generic Programming is a an objective when writing code to make algorithms reusable and with the least amount of specific code. Intel describes generic programming as "writing the best possible algorithms with the least constraints". An example of generic code is STL's templating functions which provide generic code that can be used with many different types without requiring much specific coding for the type(an addition template could be used for int, double, float, short, etc without requiring re-coding). A non-generic library requires types to be specified, meaning more type-specific code has to be created.

An example of generic coding

TBB Background

Threaded building blocks is an attempt by Intel to push the development of multi-threaded programs, the library implements containers and algorithms that improve the ability of the programmer to create multi-threaded applications. The library implements parallel versions of for, reduce and scan patterns. Threaded building blocks was originally developed by Intel but the concepts that it uses are derived from a diverse range of sources. Threaded building blocks was created in 2004 and was open sourced in 2007, the latest release of Threaded building blocks was in 2017.

STL Background

The STL was created as a general purpose computation library that a focus on generic programming. The STL uses templates extensively to achieve compile time polymorphism. In general the library provide four components: algorithms, containers, functions and iterators.

The library was, mostly, created by Alexander Stepanov due to his ideas about generic programming and its potential to revolutionize software development. Because of the ability of C++ to provide access to storage using pointers, C++ was used by Stepanov, even though the language was still relatively young at the time.

After a long period of engineering and development of the library, it obtained final approval in July 1994 to become part of the language standard.

A Comparison from STL

In general, most of STL is intended for use within a serial environment. This however changes with C++17's introduction of parallel algorithms.

Algorithms Are supported by STL for various algorithms such as sorting, searching and accumulation. All can be found within the header "<algorithm>". Examples include sort() and reverse() functions.

STL iterators Are supported for serial traversal. Should you use an iterator in parallel, you must be cautious to not change the data while a thread is going through the iterator. They are defined within the header "<iterator>" and is coded as

#include<iterator> 
foo(){
  vector<type> myVector;
  vector<type>::iterator i;
  for( i = myVector.begin(); i < myVector.end(); i++){
   bar();
  }

}

Containers STL supports a variety of containers for data storage. Generally these containers are supported in parallel for read actions, but does not safely support writing to the container with or without reading at the same time. There are several header files that are included such as "<vector>", "<queue>", and "<deque>".Most STL containers do not support concurrent operations upon them. They are coded as:

#include<vector>
#include<dequeue>
#include<queue>

int main(){
  vector<type> myVector;
  dequeue<type> cards; 
  queue<type> SenecaYorkTimHortons;
  }

Memory Allocater The use of a memory allocator allows more precise control over how dynamic memory is created and used. It is the default memory allocation method(ie not the "new" keyword) for all STL containers. The allocaters allow memory to scale rather then using delete and 'new' to manage a container's memory. They are defined within the header file "<memory>" and are coded as:

#include <memory>

void foo(){
std::allocater<type> name;
}

A Comparison from TBB

Containers

concurrent_queue : This is the concurrent version of the STL container Queue. This container supports first-in-first-out data storage like its STL counterpart. Multiple threads may simultaneously push and pop elements from the queue. Queue does NOT support and front() or back() in concurrent operations(the front could change while accessing). Also supports iterations, but are slow and are only intended for debugging a program. This is defined within the header "tbb/concurrent_queue.h" and is coded as:
#include <tbb/concurrent_queue.h>
//....//
tbb:concurrent_queue<typename> name; 
concurrent_vector : This is a container class for vectors with concurrent(parallel) support. These vectors do not support erase operations but do support operations done by multiple threads such as push_back(). Note that when elements are inserted, they cannot be removed without calling the clear() member function on it, which removes every element in the array. The container when storing elements does not guarantee that elements will be stored in consecutive addresses in memory. This is defined within the header "tbb/concurrent_vector.h" and is coded as:
#include <tbb/concurrent_vector.h>
//...//

 tbb:concurrent_vector<typename> name; 

concurrent_hash_map : A container class that supports hashing in parallel. The generated keys are not ordered and there will always be at least 1 element for a key. Defined within "tbb/concurrent_hash_map.h"

Algorithms

parallel_for: Provides concurrent support for for loops. This allows data to be divided up into chunks that each thread can work on. The code is defined in "tbb/parallel_for.h" and takes the template of:

foo parallel_for(firstPos, lastPos, increment { boo()}

parallel_scan: Provides concurrent support for a parallel scan. Intel promises it may invoke the function up to 2 times the amount when compared to the serial algorithm. The code is defined in "tbb/parallel_scan.h" and according to intel takes the template of:

void parallel_scan( const Range& range, Body& body [, partitioner] );


parallel_invoke: Provides support for parallel calling to functions provided in the arguments. It is defined within the header "tbb/parallel_invoke.h" and is coded as:
tbb:parallel_invoke(myFuncA, myFuncB, myFuncC);

Lock Convoying Problem

What is a Lock?

A Lock(also called "mutex") is a method for programmers to secure code that when executing in parallel can cause multiple threads to fight for a resource/container for some operation. When threads work in parallel to complete a task with containers, there is no indication when the thread reach the container and need to perform an operation on it. This causes problems when multiple threads are accessing the same place. When doing an insertion on a container with threads, we must ensure only 1 thread is capable of pushing to it or else threads may fight for control. By "Locking" the container, we ensure only 1 thread accesses at any given time.

To use a lock, you program must be working in parallel(ex #include <thread>) and should be completing something in parallel. You can find c++11 locks with #include <mutex>

Code example or Picture here ^_^

#include <iostream>
#include <thread> 
#include <mutex>

//Some threads are spawned which call this function
//Declared the following within the class std::mutex NightsWatch;
void GameOfThronesClass::GuardTheWall(){

//Protect until Unlock() is called. Only 1 thread may do this below at a time. It is //"locked"
NightsWatch.Lock();

//Increment
DaysWithoutWhiteWalkerAttack++;
std::cout << "It has been " << DaysWithoutWhiteWalkerAttack << " since the last attack at Castle Black!\n";

//Allow Next thread to execute the above iteration
NightsWatch.Unlock();


}

Note that there can be problems with locks. If a thread is locked but it is never unlocked, any other threads will be forced to wait which may cause performance issues. Another problem is called "Dead Locking" where each thread may be waiting for another to unlock (and vice versa) and the program is forced to wait and wait .

Parallelism Problems & Convoying in STL

Within STL, issues arise when you attempt to access containers in parallel. With containers, when threads update the container say with push back, it is difficult to determine where the insertion occurred within the container(each thread is updating this container in any order) additionally, the size of the container is unknown as each thread may be updating the size as it goes (thread A may see a size of 4 while thread B a size of 9). For example, in a vector we can push some data to it in parallel but knowing where that data was pushed to requires us to iterate through the vector for the exact location . If we attempt to find the data in parallel with other operations ongoing, 1 thread could search for the data, but another could update the vector size during that time which causes problems with thread 1's search as the memory location may change should the vector need to grow(performs a deep copy to new memory).

Locks can solve the above issue but cause significant performance issues as the threads are forced to wait for each other before continuing. This performance hit is known as Lock Convoying.

Performance issues inside STL

Lock Convoying in TBB

TBB attempts to mitigate the performance issue from parallel code when accessing or completing an operation on a container through its own containers such as concurrent_vector. Through concurrent_vector, every time an element is accessed/changed, a return of the index location is given. TBB promises that any time an element is pushed, it will always be in the same location, no matter if the size of the vector changes in memory. With a standard vector, when the size of the vector changes, the data is copied over. If any threads are currently traversing this vector when the size changes, any iterators may no longer be valid. This support also goes further for containers so that multiple threads can iterate through the container while another thread may be growing the container. An interesting catch though is that anything iterating may iterate over objects that are being constructed, ensuring construction and access remain synchronized.

TBB also provides its own versions of the mutex such as spin_mutex for when mutual exclusion is still required.

You can find more information on convoying and containers here: https://software.intel.com/en-us/blogs/2008/10/20/tbb-containers-vs-stl-performance-in-the-multi-core-age

A Comparison between Serial Vector and TBB concurrent_vector

If only you knew the power of the Building Blocks

Using the code below, we will test the speed at completing some operations regarding vectors using the stl library with stl's vector and tbb's concurrent_vector. The code below will perform a "push back" operation both in serial and concurrent. Then, it measure the time taken to complete an n of push back operations.

#include <iostream>
#include <tbb/tbb.h>
#include <tbb/concurrent_vector.h>
#include <vector>
#include <fstream>
#include <cstring>
#include <chrono>
#include <string>

using namespace std::chrono;

// define a stl and tbb vector
tbb::concurrent_vector<std::string> con_vector_string;
std::vector<std::string> s_vector_string;

tbb::concurrent_vector<int> con_vector_int;
std::vector<int> s_vector_int;



void reportTime(const char* msg, steady_clock::duration span) { 
  auto ms = duration_cast<milliseconds>(span);
  std::cout << msg << " - took - " <<
    ms.count() << " milliseconds" << std::endl;
}

int main(int argc, char** argv){
  
  if(argc != 2) { return 1; } 
  
  int size = std::atoi(argv[1]);

  steady_clock::time_point ts, te;
  
   /* 
      
      TEST WITH STRING OBJECT
      
    */
  
  ts = steady_clock::now();
  // serial for loop
  for(int i = 0; i < size; ++i)
    s_vector_string.push_back(std::string());
  te = steady_clock::now();
  
  reportTime("Serial vector speed - STRING: ", te-ts);

  ts = steady_clock::now();
  // concurrent for loop
  tbb::parallel_for(0, size, 1, [&](int i){
      con_vector_string.push_back(std::string());
    });
  te = steady_clock::now();

  reportTime("Concurrent vector speed - STRING: ", te-ts);

  /*
    
    TEST WITH INT DATA TYPE
    
   */

  std::cout<< "\n\n";
  
  ts = steady_clock::now();
  // serial for loop
  for(int i = 0; i < size; ++i)
    s_vector_int.push_back(i);
  te = steady_clock::now();
  
  reportTime("Serial vector speed - INT: ", te-ts);

  ts = steady_clock::now();
  // concurrent for loop
  tbb::parallel_for(0, size, 1, [&](int i){
      con_vector_int.push_back(i);
    });
  te = steady_clock::now();

  reportTime("Concurrent vector speed - INT: ", te-ts);

}


A speed comparison between concurrent and serial vectors


The results in a table format, notice the int serial speed is faster then concurrent


The Speed Improvement

As the table suggests, completing push back operations using tbb's concurrent vector allows for increased performance against a serial connection. TBB additionally provides a benefit that it will never need to resize the vector as pushback operations are completed. In STL, the vector is dynamically allocated which requires it to reallocate and copy memory over which may further slow down the push back operation.

Why was TBB slower for Int?

When dealing with primitive types like int, the actual operation to push back is not very complex; meaning that a serial process can complete the push back quite quickly. The vector can also likely hold a lot more data before requiring to reallocate its memory. TBB's practicality comes when performing a more complex action on a primitive type or from a simple action on a more complex type. Parallel overhead(the resources required to support tbb in parallel) may also increase the time required which could be the cause of the slowdown in the above comparison. TBB also provides automatic chunking and describes the benifit for use of parallel_for is 1 million clock cycles.

Business Point of View Comparison for STL and TBB

I find your lack of grain disturbing

Which library is better depending the on the use case?

One major aspect to look for when parallelizing a piece of code is the Cost- Benefit. Is it worth the time and effort to parallelize a part of your software only to get a small performance gain? Or is just faster to keep in serial? Many of these questions must be answered when deciding to parallelize your code or not.

TBB helps to lower the cost of smaller performance benefit. Due to TBB requiring less effort to implement. Compared to other multi-threading libraries

  • If are just trying to parallelize a section of your code with a simple map, scan, or reduce pattern. Without much thought TBB has you covered.
  • When working with large collections of data TBB with its use of block range coupled with it algorithms makes it simpler to come up with solutions for the collection

TBB enables you to specify logical parallelism instead of threads. It eliminates the time needed when developing a backbone for your code when working with threads. For quick and easy solutions for parallelize your code TBB is the way to go.

STL stands on its own right, with its well-designed serial features. When trying to have more control near hardware level, or you need to work near hardware level, the STL library with the threading libraries is the way to go. Though there are thread safety issues.

Conclusion

TBB only gives you parallel solutions, STL gives you the foundations for many serial algorithms for sorting, searching, and a verity of containers.


Implementation Safety for TBB and STL

We are all human and we do make mistakes. Less mistakes done by developers will equal to less wasted time.

  • TBB specifically makes concurrent_vector container not to support insert and erase operations. Only new items can be pushed back, and cannot be shrunk.
    • This prevents developers to write bad code. If for example, we would allow insert and erase operations on concurrent_vector, it could cause a big performance hit. This performance hit can burden both iterating and growing operations which will not only make the concurrent containers in TBB unless, but also your program inefficient.
  • As already stated most of the STL containers are not thread safe. Though some operations in TBB containers are also not thread safe, like reserve() and clear() in concurrent_vector.
  • Thread Creation, terminating, and synchronizing, partitioning is managed by TBB. This creates a layer of safety on the programmer’s end, has they do not have to deal with the threads themselves, making a developer less prone to make mistakes in their code.


Identifying the worries and responsibilities

The increasing complexity of your code is a natural problem when working in parallel. Knowing the responsibilities as in what you must worry about as a developer is key. When trying quickly implement parallel regions in your code, or to just to keep your code serial.

STL

If you are going to try to parallelize your code using STL coupled with the threading libraries this is what you must worry

  • Thread Creation, terminating, and synchronizing, partitioning, thread creation, and management must be handled by you. This increases the work load and the complexity.
  • The thread creation and overall resource for STL is managed by a combination of libraries.
  • Dividing collection of data is more of the problem when using the STL containers. Also mentioning that is not thread safe.
  • C++11 does not have any parallel algorithms. So, any common parallel patterns such as; map, scan, reduce, must be implemented by yourself, or by another library. But the latest STL C++17, will have some parallel algorithms like scan, map, and reduce.

The benefit of STL is due to the fact that you must manage the thread/ resources yourself which give you more control on the code, and fine tuning optimizations. Nonetheless, managing the thread yourself can be a double edge sword since with more control, it will take time implementing the code and the level of complexity will increase.

What you don’t need to worry about

  • Making sorting, searching algorithms.
  • Partitioning data.
  • Array algorithms; like copying, assigning, and checking data
  • Types of data storage
  • Value pairing

Note all algorithms is done in serial, and may not be thread safe

TBB

Thread Creation, terminating, and synchronizing, partitioning, thread creation, and management is managed by TBB. This make you need not to worry about the heavy constructs of threads which are close to the hardware level.

  • Making a solution from close to hardware level allows you to be flexible to the solution you are wanting to make. But the major downside is the requirement of implementing the foundations first to make your solution work. It also has the potential of making your program inefficient if not done correctly.

TBB does have Parallel Algorithms support, that has been already mentioned.

Benefit

The benefit of TBB is that it is made in such a way that you as a programmer can only worry about one thing; how to parallelize your serial code. You do not need to worry about the resource management. The TBB model allows you to make quick parallel implementation solutions with less amount of effort.

Downside

The downside of TBB is since much of the close to hard hardware management is done be hide the scenes, it makes you has a developer have less control on finetuning your program. Unlike how STL with the threading library allows you to do.